{
  "_id": "6a1d44ab1d7bb097a0a41e11",
  "Package": "scBSP",
  "Version": "1.1.0",
  "Date": "2025-09-01",
  "Title": "A Fast Tool for Single-Cell Spatially Variable Genes\nIdentifications on Large-Scale Data",
  "Authors@R": "c(\nperson(\"Jinpu\", \"Li\", email = \"castle.lee.f@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6656-2896\")),\nperson(\"Yiqing\", \"Wang\", email = \"yiqing@wangemail.com\", role = \"aut\")\n)",
  "Description": "Identifying spatially variable genes is critical in\nlinking molecular cell functions with tissue phenotypes. This\npackage utilizes a granularity-based dimension-agnostic tool,\nsingle-cell big-small patch (scBSP), implementing sparse matrix\noperation and KD tree methods for distance calculation, for the\nidentification of spatially variable genes on large-scale data.\nThe detailed description of this method is available at Wang,\nJ. and Li, J. et al. 2023 (Wang, J. and Li, J. (2023),\n<doi:10.1038/s41467-023-43256-5>).",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "Repository": "https://castleli.r-universe.dev",
  "Date/Publication": "2025-09-02 02:49:18 UTC",
  "RemoteUrl": "https://github.com/castleli/scbsp",
  "RemoteRef": "HEAD",
  "RemoteSha": "94e05397b9f5d4ff7e4434364f9c43c4fc6a1635",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-01 08:33:31 UTC",
    "User": "root"
  },
  "Author": "Jinpu Li [aut, cre] (ORCID: <https://orcid.org/0000-0002-6656-2896>),\nYiqing Wang [aut]",
  "Maintainer": "Jinpu Li <castle.lee.f@gmail.com>",
  "MD5sum": "70724323acf7ab2a17d187fadc6223d2",
  "_user": "castleli",
  "_type": "src",
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  "_created": "2026-06-01T08:33:31.000Z",
  "_published": "2026-06-01T08:36:59.608Z",
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    "message": "Add files via upload\n\nupdate functions",
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    "email": "castle.lee.f@gmail.com",
    "login": "castleli",
    "description": "",
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  "_owner": "castleli",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
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      "week": "2025-36",
      "n": 4
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  "_stars": 22,
  "_contributors": [
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/scBSP"
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    "extra/citation.json",
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    "extra/contents.json",
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    "extra/readme.md",
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  "_realowner": "castleli",
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    "CombinePvalues",
    "LoadSpatial",
    "scBSP",
    "SpFilter"
  ],
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    {
      "page": "CombinePvalues",
      "title": "Combine p-values across multiple samples from scBSP",
      "topics": [
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      "title": "Loading data from a Seurat object or a data frame.",
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      "title": "A Granularity-Based Approach to identify Spatially Variable Genes",
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        "scBSP"
      ]
    },
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  "_indexed": true,
  "_nocasepkg": "scbsp",
  "_universes": [
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