Package: scBSP 1.0.0

scBSP: A Fast Tool for Single-Cell Spatially Variable Genes Identifications on Large-Scale Data

Identifying spatially variable genes is critical in linking molecular cell functions with tissue phenotypes. This package utilizes a granularity-based dimension-agnostic tool, single-cell big-small patch (scBSP), implementing sparse matrix operation and KD tree methods for distance calculation, for the identification of spatially variable genes on large-scale data. The detailed description of this method is available at Wang, J. and Li, J. et al. 2023 (Wang, J. and Li, J. (2023), <doi:10.1038/s41467-023-43256-5>).

Authors:Jinpu Li [aut, cre], Yiqing Wang [aut]

scBSP_1.0.0.tar.gz
scBSP_1.0.0.zip(r-4.5)scBSP_1.0.0.zip(r-4.4)scBSP_1.0.0.zip(r-4.3)
scBSP_1.0.0.tgz(r-4.5-any)scBSP_1.0.0.tgz(r-4.4-any)scBSP_1.0.0.tgz(r-4.3-any)
scBSP_1.0.0.tar.gz(r-4.5-noble)scBSP_1.0.0.tar.gz(r-4.4-noble)
scBSP_1.0.0.tgz(r-4.4-emscripten)scBSP_1.0.0.tgz(r-4.3-emscripten)
scBSP.pdf |scBSP.html
scBSP/json (API)

# Install 'scBSP' in R:
install.packages('scBSP', repos = c('https://castleli.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/castleli/scbsp/issues

On CRAN:

Conda:

4.43 score 18 stars 2 scripts 613 downloads 3 exports 13 dependencies

Last updated 2 months agofrom:68f547f30a. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 07 2025
R-4.5-winWARNINGMar 07 2025
R-4.5-macWARNINGMar 07 2025
R-4.5-linuxWARNINGMar 07 2025
R-4.4-winWARNINGMar 07 2025
R-4.4-macWARNINGMar 07 2025
R-4.4-linuxWARNINGMar 07 2025
R-4.3-winWARNINGMar 07 2025
R-4.3-macWARNINGMar 07 2025

Exports:LoadSpatialscBSPSpFilter

Dependencies:dotCall64fitdistrpluslatticeMASSMatrixMatrixGenericsmatrixStatsRANNRcpprlangspamsparseMatrixStatssurvival